kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
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No <install_dir>/bin folder after installation #118

Open GimenaA opened 2 years ago

GimenaA commented 2 years ago

Hello, I followed the following steps to install sailfish. I know I need to add the /bin to my PATH after the installation. However, I don't see the bin folder in my folder. Can someone please tell me if I'm missing a step in my installation process or what should I do? I'm installing on Ubuntu 20.04.

STEPS TAKEN:

  1. wget https://github.com/kingsfordgroup/sailfish/archive/refs/tags/v0.10.0.zip
  2. unzip v0.10.0.zip
  3. cd sailfish-0.10.0
  4. mkdir build
  5. cd build
  6. cmake -DFETCH_BOOST=TRUE ..
  7. make
  8. make install

THESE ARE THE FOLDERS AND FILES I SEE ON MY SAILFISH TOP FOLDER:

I saw that @rob-p has a great explanation here https://github.com/kingsfordgroup/sailfish/issues/107#issuecomment-366569471 on how to add the sailfish binary path to the PATH variable, but like I said I don't see my sailfish bin folder.

I appreciate any help you can provide!! Gimena