search

kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
124 stars 45 forks source link

jellyfish hpp files and HeptamerIndex.cpp #23

Closed sewen67 closed 9 years ago

sewen67 commented 10 years ago

Hi all, I am trying to view the source code in XCode. However, I could not find any of the jellyfish.hpp files (for example jellyfish/sequence_parser.hpp) in the "sailfish-0.6.3" folder. Should I download it from the Internet? Morevoer, when I "build" the project in XCode, it returns a wrong message in the "HeptamerIndex.cpp" line 58 saying that "C++ requires a type specifier for all declarations". Any suggestions?

Thank you.

sewen67

rob-p commented 9 years ago

Sorry @sewen67, that it seems like this ticket has been open forever! The build system pulls in jellyfish as a dependency when it is invoked. This prevents us from having to keep the source code for all of our dependencies directly in our repository. HeptamerIndex is not actually used in any live code, so I'm guessing the problem there is XCode trying to make a build file when it doesn't really know what's live or not. In any case, all of the development for the past 8 months or so has been on the develop branch of the repo, where the big development has been salmon; the successor to sailfish.