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kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
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New Sailfish release to fix linking error #71

Closed LeeMendelowitz closed 9 years ago

LeeMendelowitz commented 9 years ago

There is this linking error in the sailfish 0.6.3 release that has since been resolved. I was trying to build sailfish from source and ran into the same error detailed here in the users group:

/usr/bin/ld: cannot find -llib_activeobject
collect2: error: ld returned 1 exit status

Instead, I downloaded the latest source from the master branch (commit 6f6d2725f362973d21609dee30d4be74165268cf) and tried the build and it worked fine.

It would be useful to get this out as release 0.6.4 so people don't run into this problem trying to build from source on 0.6.3

rob-p commented 9 years ago

Hi Lee,

Things have been significantly re-worked in the v0.7.0 branch. Hopefully, this issue (and numerous others) should be resolved.