search

kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
124 stars 45 forks source link

Provide option to skip update check #76

Closed jdidion closed 9 years ago

jdidion commented 9 years ago

I run salmon on a cluster in which network access is blocked for running jobs, therefore salmon hangs for some time while checking for updates. Please provide a command line option to skip this check.

kingsfordgroup commented 9 years ago

The option:

--no-version-check

should do this now. Let us know if it doesn’t work.

Carl

On Mar 27, 2015, at 7:14 AM, John Didion notifications@github.com wrote:

I run salmon on a cluster in which network access is blocked for running jobs, therefore salmon hangs for some time while checking for updates. Please provide a command line option to skip this check.

— Reply to this email directly or view it on GitHub https://github.com/kingsfordgroup/sailfish/issues/76.

rob-p commented 9 years ago

For the record, the --no-version-check flag should be passed before any salmon command (this is because the version check itself happens before any other command is executed). So, the command would look something like:

> salmon --no-version-check quant [quant options]

Since this should resolve the issue, I'm going to close this ticket. Please re-open it if you find this doesn't work for you or encounter a related issue.