search

kingsfordgroup / sailfish

Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
124 stars 45 forks source link

Make fails (Debian Wheezy) #95

Open scienceforever opened 8 years ago

scienceforever commented 8 years ago

cc1plus: warning: unrecognized command line option "-Wno-deprecated-register" [enabled by default]

I see this when attempting to make both sailfish and salmon. Thanks for the hints.

phpeters commented 8 years ago

Hej, I have the same issue on CentOS 6.7.

The initial command was: cmake -DBOOST_ROOT=/path/to/boost_1_60_0/ -DBoost_NO_SYSTEM_PATHS=ON .. Seems to be related to that file: make[2]: *\ [src/CMakeFiles/sailfish_core.dir/SailfishIndexer.cpp.o] Error 1

I tried as well with these flags, resulting in the same error: -DFETCH_BOOST=FALSE -DBoost_NO_BOOST_CMAKE=TRUE

I have the boost folders in my $LD_LIBRARY_PATH and I'm using gcc 4.9.2. Any ideas? Thanks and best regards, Philipp