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kipoi
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kipoiseq
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
https://kipoi.org/kipoiseq/
MIT License
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Bump tqdm from 4.45.0 to 4.66.3
#117
dependabot[bot]
opened
6 months ago
0
VariantSeqExtractor fix: allow padding if sequence gets out of bounds
#116
gtsitsiridis
closed
2 months ago
1
fix "gt_type != 2" to 3 (unknown)
#115
shinichinamba
closed
1 year ago
1
'No loss found. You may have forgotten to provide a `loss` argument '
#114
xkluan
opened
2 years ago
0
Bump numpy from 1.18.3 to 1.22.0
#113
dependabot[bot]
opened
2 years ago
1
Allow to directly specify whether or not to use strand information
#112
Hoeze
closed
2 years ago
0
Listing dataloaders available
#111
ilibarra
opened
2 years ago
0
Pin sorted-nearest to 0.0.33
#110
haimasree
closed
2 years ago
1
Pin sorted-nearest to 0.0.33
#109
haimasree
closed
2 years ago
1
VCF_matching_bug_for_interval_arg, fixes #107
#108
MuhammedHasan
closed
2 years ago
0
VCF matching returns false results when used with intervals argument
#107
MuhammedHasan
closed
2 years ago
0
"postprocessing" is this part of min_set_props?
#106
MuhammedHasan
opened
2 years ago
0
fix variant end (#104)
#105
Hoeze
closed
3 years ago
0
Bug in variant end calculation
#104
Hoeze
closed
3 years ago
3
Fixing ci and moving pyranges to top level import
#103
haimasree
closed
3 years ago
0
Error with AnchoredGTFDl
#102
PelFritz
opened
3 years ago
3
Kipoiseq installation problems
#101
PelFritz
closed
3 years ago
0
Allow to directly annotate a list of variants
#100
Hoeze
closed
3 years ago
0
Add one hot encode from enformer
#99
haimasree
closed
3 years ago
2
Remove default arguments from xpresso
#98
haimasree
closed
3 years ago
0
Making info.authors a list
#97
haimasree
closed
3 years ago
0
Kipoified xpresso dataloader
#96
haimasree
closed
3 years ago
1
pyranges import
#95
haimasree
closed
3 years ago
3
variant combinator
#94
MuhammedHasan
closed
2 years ago
2
added anchoring
#93
Karollus
closed
3 years ago
3
bug fix for split vcf file
#92
MuhammedHasan
closed
3 years ago
0
Bug fix split vcf into chuncks
#91
MuhammedHasan
closed
3 years ago
0
Api suggestion
#90
Hoeze
opened
3 years ago
1
Split vcf into chuncks
#89
MuhammedHasan
closed
3 years ago
1
infer_from_cds in UTRFetcher does not work correctly
#88
Hoeze
opened
3 years ago
1
Resolve int conversion bug when inferring UTR from CDS
#87
Hoeze
closed
3 years ago
0
Add automatic deployment
#86
Hoeze
closed
3 years ago
0
re-enabled use_strand option
#85
Karollus
closed
4 years ago
0
Updated UTR Fetcher and changed _filter_biotype and _filter_tag
#84
lauradmartens
closed
4 years ago
1
Implements sequence extractor to construct sample genotypes for interval from FASTA reference and phased VFC
#83
bfclarke
opened
4 years ago
1
Handle multi alternative variant in iteration
#82
MuhammedHasan
closed
4 years ago
0
Implement inference for UTRFetcher
#81
Hoeze
closed
3 years ago
0
[WIP] UTR data loader
#80
Hoeze
closed
4 years ago
1
Add documentation to all classes / __init__() functions to explain their function
#79
Hoeze
opened
4 years ago
0
Phased dataloader
#78
Hoeze
opened
4 years ago
0
make pyranges optional again
#77
Hoeze
closed
4 years ago
1
info about variants
#76
KalinNonchev
closed
4 years ago
1
dependabot
#75
KalinNonchev
closed
4 years ago
0
Extractors dataloader
#74
KalinNonchev
closed
4 years ago
1
Multiple variants
#73
KalinNonchev
closed
4 years ago
1
bug with nan values in tag fixed for grch37
#72
KalinNonchev
closed
4 years ago
0
Vcf variants not defined
#71
KalinNonchev
closed
4 years ago
1
vcf case for undefined variants - skip
#70
KalinNonchev
closed
4 years ago
0
Kalin nonchev protein dl grch38
#69
KalinNonchev
closed
4 years ago
2
bug in second parameter `Interval` should be interval
#68
MuhammedHasan
opened
4 years ago
0
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