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kipoi / kipoiseq

Standard set of data-loaders for training and making predictions for DNA sequence-based models.
https://kipoi.org/kipoiseq/
MIT License
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Add dataloaders for variant-effect prediction #21

Open Avsecz opened 5 years ago

Avsecz commented 5 years ago

Implement efficient dataloaders for each dataloaders performing in-silico mutagnesis.

Schema

{
  "inputs" {
       "ref": {},
       "alt": {},
  "metadata": {
     "variant": {}   # TODO - have a standard variant class
      "seq": {"ranges": kipoi.metadata.GenomicRanges   } 
}
}

Features