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kipoi
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kipoiseq
Standard set of data-loaders for training and making predictions for DNA sequence-based models.
https://kipoi.org/kipoiseq/
MIT License
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Additional transforms
#8
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Avsecz
opened
6 years ago
Avsecz
commented
6 years ago
k-mer or gapped k-mer counter
simple reverse complementation function
transforms/augmentation.py
random sub-sequence augmentation
random reverse-complementation
Avsecz
commented
6 years ago
experiment with using Numba to implement k-mer counting or other transforms. Have a fallback method if the user doesn't have numba installed locally
try: import numba @numba.jit def kmers.... except: def kmers
transforms/augmentation.py