kipoi test <model-name> --source=kipoi tests whether a specific conda environment can be resolved for model-name. In addition, for models whose yaml representation contains a test tag the corresponding file under expected is downloaded and verified against the predictions produced by the model. This is rather useful because changing versions of some dependencies could creep in numerical errors that are hard to detect. The following model groups dont contain such test files.
[x] AttentiveChrome
[x] BPNet-OSKN
[ ] Basenji
[x] DeepMEL
[x] FactorNet
[x] Framepool
[ ] MMSplice
[x] MPRA-DragoNN
[ ] SeqVec
[x] Xpresso (we will wait until kipoiseq has a suitable dataloader)
haimasree
commented
2 years ago
kipoi test <model-name> --source=kipoitests whether a specific conda environment can be resolved formodel-name. In addition, for models whose yaml representation contains atesttag the corresponding file underexpectedis downloaded and verified against the predictions produced by the model. This is rather useful because changing versions of some dependencies could creep in numerical errors that are hard to detect. The following model groups dont contain such test files.