Support Parallel computing

kircherlab / CADD-scripts

CADD scripts release for offline scoring. For more information about CADD, please visit our website

http://cadd.gs.washington.edu

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Support Parallel computing #71

Open geertvandeweyer opened 2 months ago

geertvandeweyer commented 2 months ago

This PR includes:

Activation of parallel processing through snakemake scatter/gather
strip 'chr' prefix in contigs

For benchmarking, see : https://hub.docker.com/repository/docker/cmgantwerpen/cadd/general

visze commented 1 month ago

thanks @geertvandeweyer cfor the PR. I am aware of it just found no time yet to look deeper into it. Maybe you can give some more explanations what was the intention with the rule specific threding limits. But personally I like that you start using resources in snakemake!