chore(master): release MPRAsnakeflow 0.3.0 - Githubissues

kircherlab / MPRAsnakeflow

new implementation of MPRAsnakeflow fork of MPRAflow

MIT License

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chore(master): release MPRAsnakeflow 0.3.0 #136

Closed github-actions[bot] closed 3 weeks ago

github-actions[bot] commented 3 weeks ago

:robot: I have created a release beep boop

0.3.0 (2024-11-05)

⚠ BREAKING CHANGES

latest development for new release (#133)
pseudocounts where not used correctly when RNA or DNA set to 0

Features

Add assignment_merge thread configuration (26e68c2)
better assignment BC statistics (00187e6)
configurable min mapping quality (28045ae)
extending figure width (8bf81c4)
faster design check (315b402)
fastq-join implementation (aaf5315)
latest development for new release (#133) (bdfc557)
make filtering consistent (5f7a4c5)
master variant table (6bda47c)
new final output file with merged replicates (66cf017)
only link assignment fasta when possible (d7d3822), closes #50
remove space, speedup BC extraction (70e9bd0)
replace merging by NGmerge (0aa8cad)
snakemake 8 compatibility (cf38ed9)
snakemake 8 ready with workflow profile (d637e1f)
statistic for assignment workflow (10c3b26)
using reverese compelment BCs (d009a6c)

Bug Fixes

batch size issue in sort (487ba8c)
correct use of assignment configs (58b64f1)
corrected qc_report_assoc (afb0127)
Detach from anaconda (#122) (16bcea2)
filter config (38ee37e)
issue with stats and asisgnment (d935fa1)
memory resources for bbmap (#123) (af93f58)
plots per insert only used last experiment. not all. (c2fd82b)
pseudocounts where not used correctly when RNA or DNA set to 0 (d2483f9)
remove illegal characters from reference (0ebee81)
rename barcoe output header (635f043)
rule make_master_tables fix (df42845)
statistic total counts (6381b92)
typo in report (ace8cca)
upgrade code to new pandas version (aaea236)
using correct threads (6dcad7d)
using multiple fastq inputs in counts (95935cf)

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