This involves adapting function calls & class instantiation according to daisy docs, which offloads some of these objects to funlib.persistence. setup.py is modified accordingly
Scripts Successfully Tested with daisy usage change:
Previously, neuroglancer scripts were insalled via an instrution in README.md as such: pip install git+https://github.com/kirchhausenlab/funlib.show.neuroglancer.git@more_scripts_v2#egg=funlib.show.neuroglancer
This no longer works because it is built using daisy < 1.0.
funkelab has updated funlib.show.neuroglancer to depend on daisy==1.0. Rather than use our branch of a fork of this repo, funlib.show.neuroglancer is installed directly via setup.py
Updated repository to work with
daisy==1.0This involves adapting function calls & class instantiation according to
daisydocs, which offloads some of these objects tofunlib.persistence.setup.pyis modified accordinglyScripts Successfully Tested with
daisyusage change:✔️
01_data_formatting/00_image_sequences_to_zarr.py✔️01_data_formatting/20_create_mask.py✔️01_data_formatting/40_equalize_histogram.py✔️01_data_formatting/60_create_metric_mask.pyneuroglancerPreviously,
neuroglancerscripts were insalled via an instrution inREADME.mdas such:pip install git+https://github.com/kirchhausenlab/funlib.show.neuroglancer.git@more_scripts_v2#egg=funlib.show.neuroglancerThis no longer works because it is built usingdaisy < 1.0.funkelabhas updatedfunlib.show.neuroglancerto depend ondaisy==1.0. Rather than use our branch of a fork of this repo,funlib.show.neuroglanceris installed directly viasetup.py