kishwarshafin helen issues

kishwarshafin / helen

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

MIT License

68 stars 9 forks source link

issues

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helen polish UserWarning on batch size

#37 lloydlowUOA opened 2 years ago
0
there are no other mammal models other than human?

#36 xdkong closed 2 years ago
2
Question about model's training data

#35 huangnengCSU closed 3 years ago
2
Only Polish interested sequences

#34 Yechao94 closed 3 years ago
3
wrong script in example Usage in README.md

#33 li081766 closed 3 years ago
1
Exception: process 6 terminated with signal SIGKILL

#32 utrivedi closed 3 years ago
5
How to train a new model with in lab testing data

#31 yipukangda closed 3 years ago
2
torch.set_num_threads error in docker image

#30 jmkidd closed 3 years ago
3
MarginPolish output zero .fa file

#29 yangxiaofeill closed 3 years ago
9
How to install helen in a gcc4.8 enrivments?

#28 biozhangzhou closed 4 years ago
3
marginpolish docker stuck at 99%

#27 MichelMoser closed 3 years ago
13
Are existing models suitable to polish a high heterozygosity plant genome assemblies?

#26 xiekunwhy closed 4 years ago
3
Add helen to bioconda.

#25 xiekunwhy closed 3 years ago
5
Fixed elapsed time display

#24 esrice closed 4 years ago
0
some problem occurs when evaluating the data of na12878 chromosome 21

#23 huangnengCSU closed 4 years ago
4
Models for Guppy 3.6

#22 dominik-handler closed 3 years ago
2
Pkg

#21 kishwarshafin closed 4 years ago
0
Master2

#20 kishwarshafin closed 4 years ago
0
Compatibility with draft assembly from other assemblers

#19 SHuang-Broad closed 4 years ago
3
Issue on stitch.py

#18 nozabey closed 4 years ago
7
margin docker run fail

#17 lstxmu closed 4 years ago
27
MarginPolish

#16 reiverjohn closed 4 years ago
3
Plant species

#15 Jolvii85 closed 4 years ago
3
HAC models

#14 MichelMoser closed 4 years ago
17
Fix #12

#13 cgjosephlee closed 5 years ago
0
output path and filename are not joined properly

#12 cgjosephlee closed 5 years ago
2
run call.consensus..py fail

#11 lstxmu closed 5 years ago
40
h5 error

#10 MichelMoser closed 4 years ago
21
marginPolish option

#9 MichelMoser closed 5 years ago
3
How does marginpolish + helen compare to nanopolish?

#8 phiweger closed 5 years ago
2
the opened github issue :fire:

#7 kishwarshafin closed 5 years ago
0
stitch.py ValueError triggered by contig sequence name

#6 krobison13 closed 5 years ago
2
Stitch fix

#5 kishwarshafin closed 5 years ago
0
Speedup in call_consensus.py

#4 kishwarshafin closed 5 years ago
0
Get the master changes to production branch

#3 kishwarshafin closed 5 years ago
0
Initial production level code merge

#2 kishwarshafin closed 5 years ago
0
Dev v1 mp rle mt

#1 kishwarshafin closed 5 years ago
0