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kitchell / app-3Dfreesurfs

This application will create a 3D surface for 87 freesurfer labels from the aparc+aseg.mgz file.
MIT License
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Added transform adjustment #1

Closed stevengeeky closed 6 years ago

stevengeeky commented 6 years ago

Applied Qform matrix to convert to LSA

kitchell commented 6 years ago

Is there a way to make the adjustment in the viewer? I worry this will put the meshes out of alignment with other data.

stevengeeky commented 6 years ago

Will the output surfaces be used for something other than the visualization? This change shouldn't affect other meshes that are displayed using ui-3dsurfaces. The sample data used for the viewer is aligned in a way that no adjustment has to be made on the viewer, but the output from this app is not aligned the same way.

stevengeeky commented 6 years ago

I can remove the axis swapping and place it on the viewer side, but the application of the Qform matrix should transform the data into LAS format (which I thought was standard). If not, then I can remove both and just place them in the visualizer

stevengeeky commented 6 years ago

Okay, I moved the axis swapping to the visualization side, but kept the Qform application

kitchell commented 6 years ago

ok! merging