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kitchell / app-AFQ_figures

This service creates 4 figures of each AFQ tract: axial, left sagittal, right sagittal, coronal. Please choose the t1 image slices you would like displayed. The default slices work well for the HCP t1 images if they have not been re-ACPC aligned. If you have ACPC aligned your t1 images using the ACPC alignment app on Brain Life the following values are a good starting point: coronal = 105, sagittal = 89, axial = 65. The img_min and img_max values refer to the value range displayed for the t1 image. The value range is calulated as follow (mean + img_min * std, mean + img_max * std). The default values are a good starting place, adjust them if your t1 is too dark or too light.
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bad X server connection. DISPLAY=:120838741 #2

Closed soichih closed 7 years ago

soichih commented 7 years ago

I ran this app on Brain-Life which landed on jetstream (matlab2) VM, and I saw following error message.

ERROR: In /home/ilan/minonda/conda-bld/work/VTK-6.3.0/Rendering/OpenGL/vtkXOpenGLRenderWindow.cxx, line 845
vtkXOpenGLRenderWindow (0x35b2fb0): bad X server connection. DISPLAY=:120838741. Aborting.

I think something went wrong with Xvfbwrapper..?

kitchell commented 7 years ago

Yeah that sounds like xfvbwrapper. Can you run it again? Remind me to look into this next week if I don't solve it this weekend

kitchell commented 7 years ago

I just ran a test and it ran on VM matlab2 with no problems

soichih commented 7 years ago

I've rerun several times but I couldn't recreate the issue -- they all finished successfully.