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kiyo-masui / bitshuffle

Filter for improving compression of typed binary data.
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Issues with importing bitshuffle's h5 module since PR #81 #105

Closed anjakefala closed 3 years ago

anjakefala commented 3 years ago

Since https://github.com/kiyo-masui/bitshuffle/commit/6899f5db159469e92e7b3c776d2087345e4d5b77 I have had issues with running caput and dias builds on github actions.

pip install --no-binary=h5py h5py results in a segmentation fault. If I changed that to pip install h5py, there are no Segmentation Fault, but I still have issues with loading modules that import h5. Regrettably, I opted into pinning to an older bitshuffle version in the meantime instead of putting more time into this.

This is limited information, but I am available to help with reproducing. In particular, any new PR with caput and dias, that installs bitshuffle from the master branch will reproduce the issue.

james-s-willis commented 3 years ago

Hey @anjakefala, can you link the github actions build that reproduces it?

anjakefala commented 3 years ago

Reproduction available here: https://github.com/chime-experiment/dias/pull/199

This PR is available for you to play with, there are not major commits on it.

anjakefala commented 3 years ago

Thanks @james-s-willis for addressing this! :tada: