Option to include synteny in locus definition

kjolley / BIGSdb

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

https://pubmlst.org/software/bigsdb/

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Option to include synteny in locus definition #127

Open kjolley opened 9 years ago

kjolley commented 9 years ago

Currently locus definitions can be refined by in silico PCR reactions that are predicted to amplify the region in question. Another option would be to require the presence of additional loci within a specific distance either upstream or downstream.

Reported by: kjolley

kjolley commented 9 years ago

Milestone: 1.11 --> 1.13

Original comment by: kjolley