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kjolley
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BIGSdb
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
https://pubmlst.org/software/bigsdb/
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Seqbin breakdown as admin on private records using job manager do not show isolate names
#967
kjolley
closed
7 months ago
1
Limit extracted sequences width to 100bp to ensure it lines up with translated sequence
#966
kjolley
closed
7 months ago
0
Have a way of indicating in isolate info and data export that there are multiple sequence tags for a locus
#965
kjolley
closed
6 months ago
0
Labels for year bar chart in dashboard can be too cluttered where multiple years have same value
#964
kjolley
closed
7 months ago
0
Flag dropdown boxes don't appear on tag scan page if there are very few rows and the page doesn't scroll
#963
kjolley
closed
7 months ago
1
Field breakdown does not display Unicode characters correctly in scheme field dropdown boxes
#962
kjolley
closed
7 months ago
0
Make sure query dashboard is generated for Publication breakdown
#961
kjolley
closed
7 months ago
0
Hyperlink PubMed id on publication query results page
#960
kjolley
closed
7 months ago
0
Existing allele tooltip in tag scan page does not display unicode characters correctly
#959
kjolley
closed
7 months ago
1
Add option to automatically flag 'ambiguous read' sequences that are otherwise CDS
#958
kjolley
closed
8 months ago
0
"lround" is not exported by the POSIX module
#957
abrozzi
closed
7 months ago
7
Option to require login for allele and profile downloads from web interface
#956
kjolley
closed
6 months ago
0
Add option to require users be logged in to run jobs that require the job manager
#955
kjolley
closed
8 months ago
0
Unitialized variable error in logs if no entry for weasyprint in bigsdb.conf when running configuration check
#954
kjolley
closed
7 months ago
0
Add option to filter composite fields by database view
#953
kjolley
opened
8 months ago
0
Add option to select all incomplete alleles for tagging in tag scan interface
#952
kjolley
closed
8 months ago
0
Disabled schemes should not appear in curator interface
#951
kjolley
closed
7 months ago
0
template.pm Module Perl Template dependency
#950
abrozzi
closed
8 months ago
2
Use fixed width locus blocks in profile combination query
#949
kjolley
closed
7 months ago
0
Add paste list for loci in Export plugin
#948
kjolley
closed
9 months ago
0
Isolate queries that include LINcode in results table will be stalled if a cache renewal is occurring
#947
kjolley
closed
9 months ago
1
Limit GenePresence to number of records that can be shown interactively
#946
kjolley
closed
9 months ago
0
The publication request notification link to show isolates doesn't work
#945
kjolley
closed
9 months ago
0
Private record link doesn't show on contents page if user has private records but no quota
#944
kjolley
closed
9 months ago
0
Have option to set a quota on private projects
#943
kjolley
closed
4 months ago
0
Make expand page width selection persistent and allow its use on more pages
#942
kjolley
closed
10 months ago
0
Don't show common names in scheme profiles by default.
#941
kjolley
closed
11 months ago
0
Disabled schemes should not be listed on database status page
#940
kjolley
closed
11 months ago
0
Show regex pattern in allowed values in the Field Description plugin where this is set
#939
kjolley
closed
11 months ago
0
Add option to make some fields expected for genome assemblies
#937
kjolley
closed
11 months ago
0
Add allele length component to SNP and AA variant definition
#936
kjolley
opened
11 months ago
0
Add 'any private records' option to private records filter
#935
kjolley
closed
11 months ago
0
There should not be a link to modify profile if user is not in site-wide users database
#934
kjolley
closed
11 months ago
0
Add public/private filter on standard interface when logged in
#933
kjolley
closed
11 months ago
1
The option to revoke API access is missing from contents page
#932
kjolley
closed
12 months ago
1
Don't allow project users to remove records from other users/groups if restrict_user or restrict_usergroup is set
#931
kjolley
closed
1 year ago
0
Allow locus filtering in typing database sequence queries
#930
kjolley
opened
1 year ago
0
Offline job manager reports incorrect number of queued jobs
#929
kjolley
closed
1 year ago
0
Schemes restricted to specific database views are shown for all records in REST API
#928
kjolley
closed
1 year ago
0
Include admin in curator list in REST API
#927
kjolley
closed
1 year ago
0
The duplicate job message is no longer hyperlinked
#926
kjolley
closed
1 year ago
0
Add option to silently ignore any new alleles that fail similarity check on batch allele upload
#925
kjolley
closed
11 months ago
0
Querying isolates by seqbin_size = 0 can be slow on large databases
#924
kjolley
closed
1 year ago
0
Show position of first stop codon in tag scan results for CDS loci
#923
kjolley
closed
1 year ago
0
Implement file format check on sequence query via API
#922
kjolley
closed
1 year ago
0
Min allele length set in locus_stats can be wrong due to new 'presence' value in schemes.
#921
kjolley
closed
9 months ago
0
The project modify permission may not be set when selecting user to be an admin of project
#920
kjolley
closed
1 year ago
1
Project names with & in them will be listed as & in dropdown project filter
#919
kjolley
closed
1 year ago
0
Query dashboard asynchronous elements don't load when publishing private records
#918
kjolley
closed
1 year ago
1
Search/browse profiles with integer field linked to LINcode fails
#917
kjolley
closed
1 year ago
0
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