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kkang7 / CDSeq_R_Package

CDSeq R Package
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there s a tie between two or more possible cell type annotations #25

Open BioRB opened 1 year ago

BioRB commented 1 year ago

Dear Developers, I'm using CDSeq to deconvolute rnaseq data. I get the following waring:

In cellTypeAssignSCRNA(cdseq_gep = cdseq.result$estGEP, cdseq_prop = cdseq.result$estProp,  :
  In cluster 26, there s a tie between two or more possible cell type annotations. A random one is chosen. Try to reduce pseudo_cell_count or adjust resolution parameter.

Is there a way to identify the cell types that get the tie? I want to see the alternatives to see how far are the cell types in the tie. thanks

kkang7 commented 1 year ago

hi, could you show all the input parameters you used for cellTypeAssignSCRNA? did you provide annotations for scRNA?