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kkdey
/
CountClust
A R package for Grade of Membership model and Visualization of counts data:
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Error in if (method == "poisson") { : the condition has length > 1
#42
geng-lee
opened
2 years ago
1
Correct release versions (Bioconductor/CRAN, Bioconda/Conda-Forge)
#41
epruesse
closed
3 years ago
1
Getting identical results in multiple trials (num_trial > 1)
#40
lijiang825
closed
3 years ago
3
Trouble reproducing results with same tolerance level for different versions
#39
cbmporter
closed
3 years ago
5
explain verb argument in FitGoM help file
#38
jhsiao999
closed
5 years ago
1
Error in tpxQ()
#37
NagaComBio
closed
6 years ago
2
FitGoM NAN issue
#36
poflawless
closed
3 years ago
4
StructureGGplot
#35
eleozzr
closed
6 years ago
2
Fixed vigenette compilation problem
#34
jhsiao999
closed
7 years ago
0
StructureGGplot does not make any plot with a single tissue label
#33
halasadi
closed
7 years ago
2
fortran compiler error during installation
#32
jhsiao999
closed
3 years ago
3
install issue
#31
davemcg
closed
3 years ago
9
problem with large count matrix
#30
sahyoun
closed
7 years ago
2
Add markers to identify training samples
#29
kkdey
closed
3 years ago
0
Add dataset installation to README
#28
JEFworks
closed
7 years ago
1
removing switch_axis_position from namespace
#27
jnpaulson
closed
7 years ago
1
fix bug in StructureGGplot.R
#26
jhsiao999
closed
7 years ago
0
The topic model takes too long to converge: is there a max no. of iterations?
#25
kkdey
closed
8 years ago
7
add option when no tissue label
#24
jhsiao999
closed
8 years ago
0
Set FitGoM default value for tol
#23
jhsiao999
closed
8 years ago
1
Error in if (QNup$L < L) { : missing value where TRUE/FALSE needed
#22
lisabang
closed
7 years ago
8
Error in if (tissue_count[i] == 1) bk <- 1 : missing value where TRUE/FALSE needed
#21
kkdey
closed
8 years ago
2
add sample label options
#20
jhsiao999
closed
8 years ago
0
BIC & StructureGGplot
#19
jhsiao999
closed
8 years ago
1
edit ExtraTopFeatures comments, add null method option
#18
jhsiao999
closed
8 years ago
0
Extend StructureGGplot
#17
jhsiao999
closed
8 years ago
0
GGplot for when there's only one sample in the cluster
#16
jhsiao999
closed
8 years ago
0
Change NEWS in next Bioconductor update
#15
kkdey
closed
8 years ago
1
Fix separating line between groups
#14
kkdey
closed
8 years ago
1
Error in structureGGplot() when there is one sample for each annotation label
#13
kkdey
closed
8 years ago
3
various fixes for submission
#12
jhsiao999
closed
8 years ago
0
Modify the function documentation
#11
kkdey
closed
8 years ago
1
library() shouldn't be called inside a package.
#10
dcgerard
closed
8 years ago
2
Have the GTEx (full and/or brain), Deng and Jaitin data as summarized experiments
#9
kkdey
closed
8 years ago
1
StructureGGplot() : add option to preserve order of data in each batch
#8
kkdey
closed
8 years ago
1
README.md: Add limma instructions; strip some whitespace.
#7
ramanshah
closed
8 years ago
0
StructureObj out type
#6
jhsiao999
closed
8 years ago
1
input to StructureObj
#5
jhsiao999
closed
9 years ago
1
Integrate the shiny app to the StructObj/ StructObj_omega/ CountClust functions
#4
kkdey
closed
3 years ago
0
saving structure output to text format
#3
jhsiao999
closed
9 years ago
3
Topics() results vary by tolerance level for the cell cycle genes. How do we choose tolerance levels?
#2
jhsiao999
closed
8 years ago
3
structure plot after batch correction
#1
jhsiao999
closed
9 years ago
0