kkdey / GSSG

Gene Set + S2G strategy annotations analyzed for disease architecture
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post-process LDSC results sc-linker #23

Open happyhamm opened 1 year ago

happyhamm commented 1 year ago

Hi @kkdey - How do we reproduce the post-processed trait results with tau-star and enrichment values per trait per gene program for sc-linker as shown in the link below? https://alkesgroup.broadinstitute.org/LDSCORE/Jagadeesh_Dey_sclinker/sclinker_results/

How would you recommend calculating the p-values if we are looking to test only 1 or 2 traits for a given scRNAseq dataset?

Thank you!