Hi,
When I performed the sc linker gene score calculation, it had the error like "KeyError: '/usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/Sample.csv'".
Here is the code I submit: "sbatch generateGenePrograms.sh /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits celltype /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/counts.csv /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/output /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/tissue.csv,/usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/celltype.csv,/usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/Sample.csv".
I think it's the format problem of the 'Sample.csv'. However, I can't find the example of input files in the sc linker tutorial. Could you give me some suggestions? Thank you.
Hi, When I performed the sc linker gene score calculation, it had the error like "KeyError: '/usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/Sample.csv'". Here is the code I submit: "sbatch generateGenePrograms.sh /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits celltype /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/counts.csv /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/output /usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/tissue.csv,/usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/celltype.csv,/usr/home/ironbank/researchdata/gtex/cattle_scdata/Complex_traits/Sample.csv". I think it's the format problem of the 'Sample.csv'. However, I can't find the example of input files in the sc linker tutorial. Could you give me some suggestions? Thank you.