klamt-lab straindesign issues

klamt-lab / straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

Apache License 2.0

33 stars 6 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

"IndexError: tuple index out of range" error with scipy>=1.13

#25 Paulocracy opened 1 week ago
1
option myseed

#24 Quendie opened 2 months ago
1
OptCouple iMM904

#23 EmanuelGoncalves closed 3 months ago
1
iMM904 Production Envelopes plot_flux_space

#22 EmanuelGoncalves opened 3 months ago
6
Too many active session and over the baseline (Gurobi)

#21 cjrodriguez98 opened 4 months ago
2
Make computations of rate-spaces by analyzing the Pareto front.

#20 VonAlphaBisZulu opened 4 months ago
0
Reimplement network compression without java

#19 VonAlphaBisZulu opened 6 months ago
0
StrainDesign compatibility issues with enzyme-constrained model

#18 JakubChromy opened 6 months ago
10
Update dependencies and CI test

#17 VonAlphaBisZulu closed 7 months ago
0
Fixed bigM/MILP bounding computation

#16 VonAlphaBisZulu closed 7 months ago
0
Could not find MCS within reactions in ko_cost

#15 liaochen1988 closed 7 months ago
4
Add openjdk from conda/pypi to requirements/yamls

#14 VonAlphaBisZulu closed 7 months ago
1
Linking CPLEX to the conda environment

#13 NoodleChad closed 7 months ago
2
Add option to return compressed solutions. Or return only one uncompressed of any compressed solution

#12 VonAlphaBisZulu opened 9 months ago
0
Stucked in preprocessing

#11 cjavier98 closed 10 months ago
2
Error when loanding models from cobra

#10 cjavier98 closed 10 months ago
2
An error when invoke compute_strain_designs

#9 Ma-Yier closed 1 year ago
3
Chalmers GEM Yeast Model -- No Solutions

#8 tylerautera closed 1 year ago
6
Issue with the JVM DLL

#7 tylerautera closed 1 year ago
3
fix: handle getitem on solvers Set gracefully

#6 VonAlphaBisZulu closed 1 year ago
0
Handle unknown solvers gracefully

#5 carrascomj closed 1 year ago
1
Add constraints that are applied to entire nested-optimization approaches

#4 VonAlphaBisZulu opened 1 year ago
0
Improve support for non-DNF GPR rules

#3 VonAlphaBisZulu opened 2 years ago
0
When solution space is 0-dimensional / a dot, it is not visible in the 3-D plot

#2 VonAlphaBisZulu opened 2 years ago
0
Create CODE_OF_CONDUCT.md

#1 VonAlphaBisZulu closed 2 years ago
0