klebgenomics / Kleborate

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Errors #50

Open githubzhw2018 opened 4 years ago

githubzhw2018 commented 4 years ago

When I conducted the command: "./kaptive.py -h" , the errors happened and reported as below. How to fix it ? Thank you very much. Traceback (most recent call last): File "/home/micro/.local/lib/python3.6/site-packages/numpy/core/init.py", line 22, in from . import multiarray ImportError: libgfortran-ed201abd.so.3.0.0: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "./kaptive.py", line 53, in from Bio import SeqIO File "/home/micro/.local/lib/python3.6/site-packages/Bio/SeqIO/init.py", line 382, in from Bio.Align import MultipleSeqAlignment File "/home/micro/.local/lib/python3.6/site-packages/Bio/Align/init.py", line 21, in from Bio.Align import substitution_matrices File "/home/micro/.local/lib/python3.6/site-packages/Bio/Align/substitution_matrices/init.py", line 12, in import numpy File "/home/micro/.local/lib/python3.6/site-packages/numpy/init.py", line 140, in from . import core File "/home/micro/.local/lib/python3.6/site-packages/numpy/core/init.py", line 48, in raise ImportError(msg) ImportError:

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the numpy C-extensions failed. This error can happen for many reasons, often due to issues with your setup or how NumPy was installed.

We have compiled some common reasons and troubleshooting tips at:

https://numpy.org/devdocs/user/troubleshooting-importerror.html

Please note and check the following:

and make sure that they are the versions you expect. Please carefully study the documentation linked above for further help.

Original error was: libgfortran-ed201abd.so.3.0.0: cannot open shared object file: No such file or directory