search

kmansouri / OPERA

Free and open-source application (command line and GUI) providing QSAR models predictions as well as applicability domain and accuracy assessment for physicochemical properties, environmental fate and toxicological endpoints. ==================>Download the latest compiled version from the "releases" tab and run the executable installer.
MIT License
98 stars 40 forks source link

Error with path in OPERA2_linux.m #4

Closed mc-robinson closed 4 years ago

mc-robinson commented 5 years ago

Using the newest offline installation for linux, I ran into the following issue:

PaDEL calculating 2D descriptors...
Error: Unable to access jarfile /usr/local/bin/OPERA/papplication/adel-full-1.00.jar
End of descriptors calculation: Undefined function or variable 'linux'.

Digging into the source code a bit, I believe the problematic line is 419 in OPERA2_linux.m, where the file path is indeed specified as above.

Obviously this seems to just be an error with the placement of the p. However, I do believe there is another issue with the file. Upon installation, one can choose to install somewhere other than /usr/local/bin/, as I did. However, the path seems to be unchanged in this file. I can't test this with this installation since I can only find the executable, but this may be an issue.

Thanks, Matt

kmansouri commented 4 years ago

Thank you for using OPERA and sorry for the delay in answering this. The application is now more flexible with the installation location and can adapt to that.