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kmayerb / tcrdist3

flexible CDR based distance metrics
MIT License
53 stars 17 forks source link

error in import preprocess_10X #100

Open rimanpreetkaur opened 5 months ago

rimanpreetkaur commented 5 months ago

I am trying to use tcrdist3, but it keep giving me this error, I'm unable to use it, help me to sort this issue from tcrdist import preprocess_10X Traceback (most recent call last): File "", line 1, in ImportError: cannot import name 'preprocess_10X' from 'tcrdist' (/home/riman/miniconda3/lib/python3.12/site-packages/tcrdist/init.py)

kmayerb commented 5 months ago

This is not part of tcrdist3, but the script you are referring is viewable on github (tcrdist2) in case it helps you

https://github.com/kmayerb/tcrdist2/blob/API2/tcrdist/preprocess_10X.py

This is five years old so may not be perfectly suited to contemporary Cell Ranger Outputs.

On Mon, Apr 8, 2024 at 12:48 PM rimanpreetkaur @.***> wrote:

I am trying to use tcrdist3, but it keep giving me this error, I'm unable to use it, help me to sort this issue from tcrdist import preprocess_10X Traceback (most recent call last): File "", line 1, in ImportError: cannot import name 'preprocess_10X' from 'tcrdist' (/home/riman/miniconda3/lib/python3.12/site-packages/tcrdist/init.py)

— Reply to this email directly, view it on GitHub https://github.com/kmayerb/tcrdist3/issues/100, or unsubscribe https://github.com/notifications/unsubscribe-auth/ALD2PV3CVNUU5643KBVHOHDY4LX7JAVCNFSM6AAAAABF5JRYMKVHI2DSMVQWIX3LMV43ASLTON2WKOZSGIZTCOJWGUZDSMA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

rimanpreetkaur commented 5 months ago

Hi,

Thanks for reply, could you please share code for tcrdist3, how i can do it in tcrdist3. Because i downloaded tcrdist3 not tcrdist2.

Thanks, Rimanpreet Thanks & Regards, Dr Rimanpreet Kaur Postdoctoral associate Stony Brook University, New York Phone- +1 929-606-8983 *Email- @. @.>*

On Mon, Apr 8, 2024 at 4:11 PM Koshlan Mayer-Blackwell < @.***> wrote:

This is not part of tcrdist3, but the script you are referring is viewable on github (tcrdist2) in case it helps you

https://github.com/kmayerb/tcrdist2/blob/API2/tcrdist/preprocess_10X.py

This is five years old so may not be perfectly suited to contemporary Cell Ranger Outputs.

On Mon, Apr 8, 2024 at 12:48 PM rimanpreetkaur @.***> wrote:

I am trying to use tcrdist3, but it keep giving me this error, I'm unable to use it, help me to sort this issue from tcrdist import preprocess_10X Traceback (most recent call last): File "", line 1, in ImportError: cannot import name 'preprocess_10X' from 'tcrdist' (/home/riman/miniconda3/lib/python3.12/site-packages/tcrdist/init.py)

— Reply to this email directly, view it on GitHub https://github.com/kmayerb/tcrdist3/issues/100, or unsubscribe < https://github.com/notifications/unsubscribe-auth/ALD2PV3CVNUU5643KBVHOHDY4LX7JAVCNFSM6AAAAABF5JRYMKVHI2DSMVQWIX3LMV43ASLTON2WKOZSGIZTCOJWGUZDSMA>

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