search

kmayerb / tcrdist3

flexible CDR based distance metrics
MIT License
55 stars 17 forks source link

t-SNE visualization of distance matrix #112

Open SirKuikka opened 5 days ago

SirKuikka commented 5 days ago

Hi,

I wonder what you think about using t-SNE to visualize the tcrdist distance matrix. Can this be used to find clusters that are likely to recognize the same epitope. image

SirKuikka commented 4 days ago

At least I noticed that the different clusters correspond to different V and J genes, so the distance is heavily driven by those.