Closed kmayerb closed 3 years ago
To Address issue #42
We designed this with one subject per file in mind.
If I understand, the file Tissue_Bioidentity_TCRdist.tsv have multiple subject ids that you want to retain
Once all the tests pass and this PR has been added to master:
you can reinstall with
pip install git+https://github.com/kmayerb/tcrdist3.git@master
Then you can add 'subject' to the new argument:
use_cols : list ['bio_identity', 'productive_frequency', 'templates', 'rearrangement', 'subject'] list of columns to retain from original input file. Add 'subject' if you wish to retain the subject or leave it blank to use filename as before.
To Address issue #42
We designed this with one subject per file in mind.
If I understand, the file Tissue_Bioidentity_TCRdist.tsv have multiple subject ids that you want to retain
Once all the tests pass and this PR has been added to master:
you can reinstall with
pip install git+https://github.com/kmayerb/tcrdist3.git@master
Then you can add 'subject' to the new argument:
use_cols : list ['bio_identity', 'productive_frequency', 'templates', 'rearrangement', 'subject'] list of columns to retain from original input file. Add 'subject' if you wish to retain the subject or leave it blank to use filename as before.