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kmcgregor123456 / KMM_imagingNotes

Imaging Notes

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Code for QC #2

Open kmcgregor123456 opened 9 years ago

kmcgregor123456 commented 9 years ago

dicom2bxh ${dicomParentDir}/${seriesNumber}/* ${tempDir}/fmriSeries${seriesNumber}.bxh bxh2analyze --nii -b -s ${tempDir}/fmriSeries${seriesNumber}.bxh ${tempDir}/fmriSeries${seriesNumber} fslreorient2std ${tempDir}/fmriSeries${seriesNumber}.nii ${tempDir}/fmriSeries${seriesNumber}_MNI

kmcgregor123456 commented 9 years ago

bash: ./bxhabsorb: No such file or directory The most likely reason is that you (or your system administrator) need to do this (as root):

apt-get install lsb-core

If you still get the errors after running that, let me know!