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knausb / vcfR

Tools to work with variant call format files
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vcf_stats_gz should not scan entire file when entire file is not desired #70

Closed knausb closed 7 years ago

knausb commented 7 years ago

@rcorty identified a way to improve the performance of read.vcfR() When the entire file is not intended to be read in to R. This was in pull request #69. We discussed the matter and agreed that there may be a better manner to implement his suggestion. At the time, neither of us had time to address this. This issue was raised to remind me to address this matter.

knausb commented 7 years ago

Hi @rcorty, still out there? This one took me a bit to get back to. But I think I've implemented your suggestion. If you'd like to give it a try, and you have a compiler, you can use the following to install the GitHub version.

devtools::install_github(repo="knausb/vcfR")

Let me know if it's what you were hoping for.

rcorty commented 7 years ago

Hi @knausb -- looks great -- thanks!

knausb commented 7 years ago

Thank you!