Produce rarefied and un-rarefied table

knightlab-analyses / regression-benchmarking

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Produce rarefied and un-rarefied table #6

Closed ElDeveloper closed 4 years ago

ElDeveloper commented 4 years ago

From the preprocess pipeline.

patrickimran commented 4 years ago

Updating to say rarefaction+tree should both be an option - rarefaction and beta diversity distances may not make sense/will not be necessary for different feature tables. We should consider including multiple options for normalization, or just exclude any normalization from mlab.

ElDeveloper commented 4 years ago

@patrickimran are you referring to #3 instead?