de novo, closed-ref, and open-ref clustering OTU picking?

knights-lab / BugBase

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de novo, closed-ref, and open-ref clustering OTU picking? #15

Open marwa38 opened 2 years ago

marwa38 commented 2 years ago

Hi there :)

I will use vsearch plugin in qiime2 to produce OTUs and will align against greengenes so that I can use BugBase. Could you please let me know which one is accepted in BugBase; de novo, closed-ref, and open-ref clustering?

Cheers M