I have used biom file (hdf5) created by qiime pipeline as input. But BugBase is throwing error.
Then I created biom file in json format using command
biom convert -i input.biom -o output.biom --to-json
Result of head -c 80 output.biom is
{"id": "No Table ID","format": "Biological Observation Matrix 1.0.0","format_url
It is in json format (v 1.0.0)
The standalone throwing me error like:
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
line 2 did not have 8 elements
Calls: load.inputs -> read.table -> scan
Execution halted
And I tried webserver also....which is prompting me check biom file format.
I have used biom file (hdf5) created by qiime pipeline as input. But BugBase is throwing error. Then I created biom file in json format using command biom convert -i input.biom -o output.biom --to-json Result of head -c 80 output.biom is {"id": "No Table ID","format": "Biological Observation Matrix 1.0.0","format_url
It is in json format (v 1.0.0) The standalone throwing me error like: Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : line 2 did not have 8 elements Calls: load.inputs -> read.table -> scan Execution halted
And I tried webserver also....which is prompting me check biom file format.