search

knights-lab / SHOGUN

SHallow shOtGUN profiler
GNU Affero General Public License v3.0
54 stars 19 forks source link

Fix to automatically build pickle files #1

Closed bhillmann closed 8 years ago

bhillmann commented 8 years ago

On a new project pull, the software should lazy load pickle files needed for computation. If they can't be found at the location, then make them when they are needed.

An example bug log: python /project/flatiron/dan/shogun/src/bin/kegg_parse_img_ids.py -i . -o kegg.csv Traceback (most recent call last): File "/project/flatiron/dan/shogun/src/bin/kegg_parse_img_ids.py", line 77, in main() File "/project/flatiron/dan/shogun/src/bin/kegg_parse_img_ids.py", line 61, in main img_map = IMGMap.load() File "/project/flatiron/dan/shogun/src/lib/shogun/shogun/utilities/pickle_class.py", line 25, in load raise error File "/project/flatiron/dan/shogun/src/lib/shogun/shogun/utilities/pickle_class.py", line 21, in load with open(self_dump, 'rb') as handle: FileNotFoundError: [Errno 2] No such file or directory: '/project/flatiron/dan/shogun/data/pickle/IMGMap.pkl'

bhillmann commented 8 years ago

07e590a7c98c9f6f2f0658495a8c8287361d42a0