knights-lab / SHOGUN

SHallow shOtGUN profiler
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Contaminate filtering takes forever #14

Closed bhillmann closed 6 years ago

bhillmann commented 6 years ago

BURST any mode has been able to allow the filtering of contaminate reads quickly. The BURST any mode takes in a query sequences, and returns any valid alignment in the database above the given percent identification. This will be extremely faster than resolving the possible many hits in the contiminate database.

bhillmann commented 6 years ago

These changes were added in db4c99c87669f2b38b18245ac57af4534347a67a.