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knights-lab / analysis_SHOGUN

Analysis scripts and code for reproducing the analysis for the SHOGUN paper
MIT License
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HMP Samples #14

Open bhillmann opened 7 years ago

bhillmann commented 7 years ago 
/project/flatiron2/data/hmp/wgs/R1_QC_<oral,stool,skin>/complete/taxon_counts.txt

This is without strain:

/project/flatiron2/data/hmp/wgs/R1_QC_<oral,stool,skin>/shogun_utree_lca_out