Run comparisons to a variety of other tools for precision, recall, accuracy

knights-lab / analysis_SHOGUN

Analysis scripts and code for reproducing the analysis for the SHOGUN paper

MIT License

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Run comparisons to a variety of other tools for precision, recall, accuracy #4

Open bhillmann opened 7 years ago

bhillmann commented 7 years ago

Data for this issue is available in the survey folder.

bhillmann commented 7 years ago

I have kraken running (could take a while, can't farm it out due to database size), and metaphlan2 is done. @danknights do we want any other tools besides raw aligners? Pathoscope failed to install for me.