Open bhillmann opened 7 years ago
Sounds like we need a virome.ctr shogun database. There's gotta be a refseq virus set or something...
Can you give me write access to:
/project/flatiron2/ben/projects/analysis_SHOGUN/detect_viruses
Ok, you should have access now.
Can you rerun this with the confidence UTree version? Then we should be done.
Running currently. Should finish this evening sometime. I'll update with the result when it finishes.
Finished, results here:
/project/flatiron2/ben/projects/analysis_SHOGUN/detect_viruses/results/karlsson161205/shogun_utree_lca_out/
[x] Assess virome recovery
[x] Find out how deep you have to sequence human stool to get good recall of viruses (based on comparisons to deep shotgun)