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knime-ip / knip-ilastik

KNIP / Ilastik Integration (BETA)
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xyzc override #13

Closed maierl closed 7 years ago

maierl commented 7 years ago

ilastik gave me a XYT .tiff instead of a XYZC .tiff, so I implemented an override within knime.

missing input cells should be handled correctly by readResultImages().

imagejan commented 7 years ago

The TIFF format doesn't contain any standardized metadata. In the long term, it might be better and more fail-safe to find a way to read the h5 files that ilastik writes natively by default, instead of configuring it to write tiff stacks.

maierl commented 7 years ago

@imagejan you're right, this is rather a short-term fix, I would also like it better if someone took up the hdf5 branch again

dietzc commented 7 years ago

@maierl can you resolve this?!