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knime-ip / knip

KNIME Image Processing Extension
https://www.knime.com/community/image-processing
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CellH5 Reader/Writer in KNIME #92

Open dietzc opened 9 years ago

dietzc commented 9 years ago

New Nodes:

use: https://github.com/openmicroscopy/bioformats/pull/1161

Examples and definition of format: http://www.cellh5.org/.

Thanks @sommerc

maierl commented 9 years ago

CellH5 reader made it to the bioformats dev branch: https://github.com/openmicroscopy/bioformats/issues/1637

maierl commented 9 years ago

@sommerc is there any progress on the writer already?

dietzc commented 9 years ago

If the format is part of the latest BioFormats release, we should be able to open CellH5 files in KNIME.

sommerc commented 9 years ago

@maierl I wrote a CellH5 writer! It's part of PR #1753

maierl commented 9 years ago

https://github.com/openmicroscopy/bioformats/pull/1753 looking forward to that :)!