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knossos-project / knossos

KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
https://knossos.app
GNU General Public License v2.0
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how to extend knossos #495

Open thorstenwagner opened 4 years ago

thorstenwagner commented 4 years ago

Hi!

I'm looking for a guide to write an extension for specific image format (.mrc https://pypi.org/project/mrcfile/ ). I've read on your webpage that this is possible but I can't find any explanation.

Could you provide some details?

Best, Thorsten

Optiligence commented 4 years ago

We usually just convert files to tiff stacks and generate KNOSSOS datasets from those. (which can then also be streamed with any file server) If conversion is to be avoided https://github.com/knossos-project/knossos_cuber/tree/dev could be adjusted to provide directly loading from mrc.