Access-heme Support - Githubissues

knowledgesystems / cmo-pipelines

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Access-heme Support #1106

Open averyniceday opened 7 months ago

averyniceday commented 7 months ago

MPath is releasing a new gene panel and endpoint (only normal samples, no germline) Includes the following changes:

Changes to CVR Fetcher for new endpoint
Changes to automation env for new paths
Calls for data fetching, processing inside fetch-dmp-data script
Additional functions inside dmp-import-vars for redcap support

Tried to use following naming convention:

mskaccess_heme (for files) and study id references
ACCESSHEME/accessheme for log messages and function names

Additional changes not a part of this PR:

[ ] Creating paths/committing to dmp github repo
[ ] Creating redcap projects
[ ] Updating integration tests for ID mappings

DO NOT MERGE: waiting on confirmation of endpoint and test setup from MPath team