Recently, the germline server at draco.mskcc.org has been returning an empty response for the consent values. This causes us to assume that all germline samples have been unconsented and remove them from the mskimpact mutations file, leading to https://github.com/knowledgesystems/pipelines-scrum/issues/1246.
This PR fixes that behavior by exiting early if no consent values are found.
Recently, the germline server at
draco.mskcc.orghas been returning an empty response for the consent values. This causes us to assume that all germline samples have been unconsented and remove them from themskimpactmutations file, leading to https://github.com/knowledgesystems/pipelines-scrum/issues/1246.This PR fixes that behavior by exiting early if no consent values are found.
/cc @averyniceday @callachennault