knowledgesystems / cmo-pipelines

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Annotator Component #1141

Closed averyniceday closed 4 months ago

averyniceday commented 6 months ago

Done Condition Subscriber takes a message containing a sample and genomic events; genomic events are annotated and repackaged into a new message containing "AnnotatedRecords"

averyniceday commented 5 months ago

Reusing go-gnap go module developed originally for MPathProxy Provides the API for sending requests to Genome Nexus API

Prototype currently working with condensed message (Chr, Start, Stop, Ref, TumorSeqAllele) - sends message to Genome Nexus and returns annotated record.

TODO: