jamesqo
commented
7 months ago For example, the script used to import microRNA data is here: https://github.com/cBioPortal/cbioportal-core/blob/main/src/main/java/org/mskcc/cbio/portal/scripts/ImportGeneData.java but it references a database properties files that is still in cbioportal: https://github.com/cBioPortal/cbioportal/blob/master/src/main/resources/application.properties.EXAMPLE#L8-L11
The DB migration script has also been moved to the core repo: https://github.com/cBioPortal/cbioportal-core/blob/main/src/main/resources/scripts/migrate_db.py
Some scripts used to import data from the seed DB have been moved to cbioportal-core but still reference properties files in the main cbioportal repo. Enable them to be run via building the cbioportal-core repo only and update the public documentation.