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cmo-pipelines
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Script changes already deployed into production
#1179
Closed
sheridancbio
closed
4 months ago
sheridancbio
commented
4 months ago
devdb scripts and code dropped
add_clinical_attribute_metadata_headers.py : altered to allow cdd override from file
clear_cbioportal_persistence_cache.sh : has nci updates
clear-persistence-cache-shell-functions.sh : has nci updates
detect_samples_with_problematic_metadata.py : archer-solid-cv4 gene panel now accepted
updateCancerStudies.py : mysql8 reserved words fix
dmp-import-vars-functions.sh : added datadog logging (+ cvr fetch memory)
fetch-dmp-data-for-import.sh : expanded drop dead timing throughout dmp
fetch-and-import-dmp-data-wrapper.sh : cutoff for DMP import is later, set temp dir for spring batch
mycrontab : dmp wrapper starts later