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Used for issue tracking of data curation efforts.
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Studies ready to release (with oncotree code) #143

Open chenh4 opened 8 years ago

chenh4 commented 8 years ago
  1. mds_tokyo_2011 https://cbioportal.mskcc.org/study.do?cancer_study_id=mds_tokyo_2011#summary
  2. lcll_icgc_2011 https://cbioportal.mskcc.org/study.do?cancer_study_id=lcll_icgc_2011#summary
  3. aml_shanghai_2011 (OS_MONTHS is categorial) https://cbioportal.mskcc.org/study.do?cancer_study_id=aml_shanghai_2011#summary
  4. dlbc_broad_2012 https://cbioportal.mskcc.org/study.do?cancer_study_id=dlbc_broad_2012#summary
  5. skcm_broad_brafresist_2012 https://cbioportal.mskcc.org/study.do?cancer_study_id=skcm_broad_brafresist_2012#summary
  6. nbl_broad_2013 (clinical data has a lot of digits, clinical data is so weird) https://cbioportal.mskcc.org/study.do?cancer_study_id=nbl_broad_2013#summary
  7. all_stjude_2013 https://cbioportal.mskcc.org/study.do?cancer_study_id=all_stjude_2013#summary
  8. lcll_broad_2013 http://dashi-dev.cbio.mskcc.org:28080/triage/study.do?cancer_study_id=lcll_broad_2013#summary
  9. hnsc_mdanderson_2013 https://cbioportal.mskcc.org/study.do?cancer_study_id=hnsc_mdanderson_2013#summary
  10. mcl_idibips_2013 https://cbioportal.mskcc.org/study.do?cancer_study_id=mcl_idibips_2013#summary
  11. panet_shanghai_2013 https://cbioportal.mskcc.org/study.do?cancer_study_id=panet_shanghai_2013#summary
  12. es_nih_2014 https://cbioportal.mskcc.org/study.do?cancer_study_id=es_nih_2014#summary
  13. cscc_hgsc_bcm_2014 https://cbioportal.mskcc.org/study.do?cancer_study_id=cscc_hgsc_bcm_2014#summary
  14. liad_inserm_fr_2014 https://cbioportal.mskcc.org/study.do?cancer_study_id=liad_inserm_fr_2014#summary
  15. mbl_icgc_2014 https://cbioportal.mskcc.org/study.do?cancer_study_id=mbl_icgc_2014#summary
  16. hcc_inserm_fr_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=hcc_inserm_fr_2015#summary
  17. ctcl_columbia_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=ctcl_columbia_2015#summary
  18. cll_broad_2015 (paper says 538 samples but I only saw 537 in data files) https://cbioportal.mskcc.org/study.do?cancer_study_id=cll_broad_2015#summary
  19. cll_iuopa_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=cll_iuopa_2015#summary
  20. um_qimr_berghofer_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=um_qimr_berghofer_2015#summary
  21. mbl_sickkids_2016 https://cbioportal.mskcc.org/study.do?cancer_study_id=mbl_sickkids_2016#summary
  22. plmeso_nyu_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=plmeso_nyu_2015#summary
  23. luad_mskcc_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=luad_mskcc_2015#summary
  24. nbl_ucologne_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=nbl_ucologne_2015#summary
  25. mrt_bcgsc_2016 https://cbioportal.mskcc.org/study.do?cancer_study_id=mrt_bcgsc_2016#summary
ritikakundra commented 8 years ago
  1. Neuroendocrine Prostate Cancer (Trento/Cornell/Broad 2016): https://cbioportal.mskcc.org/study.do?cancer_study_id=nepc_wcm_2016#summary
  2. Prostate Adenocarcinoma (Nelson Lab, Fred Hutchinson CRC): https://cbioportal.mskcc.org/study.do?cancer_study_id=prad_fhcrc#summary
chenh4 commented 8 years ago

@schultzn @jjgao Hi Niki and JJ, the above is the study list ready for review. Please let us know if there is anything to correct/change. Thanks a lot. ps. This list includes the studies in issue #133

chenh4 commented 8 years ago

new studies: coadread_dfci_2016 https://cbioportal.mskcc.org/study.do?cancer_study_id=coadread_dfci_2016#summary

ritikakundra commented 8 years ago

Issues:

ritikakundra commented 8 years ago
  1. plmeso_nyu_2015 https://cbioportal.mskcc.org/study.do?cancer_study_id=plmeso_nyu_2015#summary