search

knowledgesystems / curation-scrum

Used for issue tracking of data curation efforts.
0 stars 0 forks source link

Comprehensive genomic analysis of malignant pleural mesothelioma identifies recurrent mutations, gene fusions and splicing alterations #91

Open jjgao opened 8 years ago

jjgao commented 8 years ago

http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3520.html

chenh4 commented 8 years ago

cancer_study_id : plmeso_genentech_2016

chenh4 commented 8 years ago

plmeso_genentech_2016 java.lang.ArrayIndexOutOfBoundsException: 3 at java.util.Arrays$ArrayList.get(Arrays.java:2866) at org.mskcc.cbio.importer.io.internal.FileUtilsImpl.getCaseListFromStagingFile(FileUtilsImpl.java:584) at org.mskcc.cbio.importer.io.internal.FileUtilsImpl.generateCaseLists(FileUtilsImpl.java:445) at org.mskcc.cbio.importer.internal.ImporterImpl.importCaseLists(ImporterImpl.java:328) at org.mskcc.cbio.importer.internal.ImporterImpl.loadCancerStudyStagingFiles(ImporterImpl.java:538) at org.mskcc.cbio.importer.internal.ImporterImpl.updateCancerStudy(ImporterImpl.java:192) at org.mskcc.cbio.importer.Admin.updateStudyData(Admin.java:724) at org.mskcc.cbio.importer.Admin.run(Admin.java:319) at org.mskcc.cbio.importer.Admin.main(Admin.java:966)

chenh4 commented 8 years ago

Fix the maf file, will re-import it.