Cleanup Sophia cohort generation script and setup data directories - Githubissues

knowledgesystems / pipelines-scrum

Repository for tracking uncategorizable issues related to backend pipelines work

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Cleanup Sophia cohort generation script and setup data directories #1224

Closed callachennault closed 5 months ago

callachennault commented 6 months ago

Done Condition (What do we need? Why do we need it? Keep this is small as possible!)

[x] Cleanup script and add to cmo-pipelines
[x] Set up data directories in /data/portal-cron/cbio-portal-data

Technical Description (How are we going to achieve the above)

Potential Issues

Dependencies

Technical Requirements

Outside People/Teams

Changes

callachennault commented 5 months ago

https://github.com/knowledgesystems/cmo-pipelines/pull/1105

callachennault commented 5 months ago

Sophia repo: https://github.mskcc.org/knowledgesystems/sophia-data