Generate age_at_sequencing_reported_years for Genie - Githubissues

knowledgesystems / pipelines-scrum

Repository for tracking uncategorizable issues related to backend pipelines work

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Generate age_at_sequencing_reported_years for Genie #1232

Closed callachennault closed 7 months ago

callachennault commented 8 months ago

Done Condition (What do we need? Why do we need it? Keep this is small as possible!)

[ ] Implement short-term solution - script to run DDP fetcher ad-hoc
[ ] Discuss and implement long-term solution - will this come from cmo-pipelines or should we feed necessary data (seq_date, from CVR) to CDM?

Note: Ramya indicated 40,000 patients missing age at sequencing - many had the seq date, check if missing DOB?

Needs to be done by Genie update mid March

Technical Description (How are we going to achieve the above)

Potential Issues

Dependencies

Technical Requirements

Outside People/Teams

Changes

callachennault commented 7 months ago

https://github.com/knowledgesystems/cmo-pipelines/pull/1132